#File:"params-EG3.1-test-3+FC-JTV.map" #"Standard JTV processing but re-zip the data at the end." #"Revised: 4-9-2009" #"GBS: Mon Sep 28 15:13:49 EDT 2009" # #"(1) Convert array names in JTV data sets to mapped array names." -jtvFiles:"EG3.1-test-3+FC-JTV.zip" -jtvInputDir:InputTree/CellTissue/Muscle -jtvOutputDir:JTV/Muscle -jtvTableDir:data.Table/ # -jtvNamesMap:"data.Table/mAdbArraySummary.map,data.Table/EGMAP.map,Affy .CEL file (16),GSP ID (9)" # #"(2) Generate HTML web pages to invoke the converted JTV data." -mapDollarsigns:$$TITLE$$,"Java TreeView - Test Samples for" -mapDollarsigns:$$TEST_OR_ALL$$,"Test samples for" -mapDollarsigns:$$TISSUE$$,"Muscle" -mapDollarsigns:$$TESTNAME$$,"EG3.1-test-3+FC-JTV" -mapDollarsigns:$$PAGE_LABEL$$,"WT+GH vs WT-GH" -mapDollarsigns:$$DESCRIPTION$$,"Muscle cells from WT 12-week mice with GH treatment and 15 week WT without GT treatment" -mapDollarsigns:$$GBS_DESCRIPTION$$,"Muscle: EG003.1+EG003.2
(T4+)  WT+GH vs WT-GH --- fold changes > 2X and p-Value<0.05" -mapDollarsigns:$$TESTNAME$$,"EG3.1-test-3+FC-JTV" -mapDollarsigns:$$CLASS_A$$,"Samples[WT+GH]: EG003.1-03, EG003.1-04, EG003.1-06" -mapDollarsigns:$$CLASS_B$$,"Samples[WT-GH]: EG003.2-01, EG003.2-02, EG003.2-03" # -jtvHTMLgenerate -jtvDescription:"$$DESCRIPTION$$" -jtvButtonName:"$$TEST_OR_ALL$$ $$TISSUE$$: $$PAGE_LABEL$$" -addProlog:"ParamScripts/prologJTV.html" -addEpilogue:"ParamScripts/epilogueJTV.html" -jtvCopyJTVjars:"JTVjars" # #"[3] Rezip the converted files" -jtvReZipConvertedFiles #"--- end ---"