#File:params-TestsIntersection-ALL.map #"Revised 5-06-2009" # #"[1] Master script to create a Tests Intersection Table file for all tests" #"in the mAdb-TestsToDo.txt file that we have data." # -inputDir:data.GBS -outputDir:html/GSP/TestsIntersection # #"The tablesDir subdir. where mapping and other reference Tables are copied" #"to the batchScripts directory." -tablesDir:data.Table # #"Limit the number of rows to the highest 500 fold-change values" -limitMaxTableRows:"500,Range FC,Descending" # -allowHdrDups -rmvTrailingBlankRowsAndColumns -hdrLines:2 -hasEmptyLineBeforeTable # -makeTestsIntersectionTable:"mAdb-TestsToDo.txt" # #"Add FC range computations and expand the TI table with " #"fields ('Max FC', 'Min FC', 'Range FC')." -addFCrangesForTestsIntersectionTable # #"Add the ('Range Mean A', 'Range Mean B', 'FC counts %') computations to" #"an expanded TestsIntersectionTable table." -addRangeOfMeansToTItable # #"Save the edited table as a .txt file" -saveEditedTable2File:"TestsIntersection-ALL.txt,HTML" -mapDollarsigns:$$EXCEL-FILE$$,"TestsIntersection-ALL.txt" # #"The mAdb-TestsToDo.txt Tables are in" #"the '-tablesDir:data.Table' subdirectory." # #"[2] Now after the Tests-Intersection .txt table is saved, generate the HTML file." #"Note: Converter removes -hasEmptyLineBeforeTable and sets -hdrLines:5 switches." # -addPrologue:data.TestsIntersection/prolog-TI.html -addEpilogue:data.TestsIntersection/epilogue-TI.html # # -addRowNumbers -addTableName:"Intersection of All GSP Fold-Change Tests for Genes in any test" -mapDollarsigns:$$TITLE$$,"All GSP Tests for Genes in any test" -allowHdrDups # -alternateRowBackgroundColor:white #-shrinkBigCells:25,-5 -shrinkBigCells:1,-5 # ###-sortRowsByColumn:Gene,Ascending -sortRowsByColumn:"Range FC",Descending # #"These map mAdb Feature Report data to Bioinformatics databases" -hrefData:"Well ID,http://madb.nci.nih.gov/cgi-bin/clone_report.cgi?CLONE=WID%3A" -hrefData:"Gene,http://www-bimas.cit.nih.gov/cgi-bin/cards/carddisp.pl?gene=" -hrefData:"Feature ID,https://www.affymetrix.com/LinkServlet?probeset=" # #"------------- End ---------------"