Trans-NIH Jak-Stat Initiative - Muscle: Stat5MKO+GH vs Stat5MKO-GH

Changes in comparison: Test samples for Muscle: Stat5MKO+GH vs Stat5MKO-GH

Muscle: EG003.1+EG003.2
(T3+)  Stat5MKO+GH vs Stat5MKO-GH --- fold changes > 2X and p-Value<0.05.

This mAdb-derived analysis report compares two groups of samples (A and B) using the paired t-test followed by a fold-change test with the threshold values listed above. The t-test is only done if are at least two samples/condition. It performs fold-change thresholding in either case. The mean A and mean B values are shown as log2 values in the following table as A Mean and B Mean. If there are not enough samples in either condition A or condition B, it only compares the fold-change (mean A/mean B) computed as the difference between the log2 means shown as A-B Mean Difference in this report - see Data Analysis Methods for more discussion. If the t-test is performed, the p-Value is reported as A-B p-Value. Individual sample expression values are reported as the RMA normalized values not using the log2. The tests, thresholding and mAdb Retrieval Report were generated on the mAdb system for the GSP data and subsequently converted to this Web page.

Clicking on the table entries for Gene, Well ID, and Feature ID will go to the GeneCard, mAdb Feature Report, and Affymetrix probe database Web page for that entry. The genes are sorted by A-B Mean Difference with:
   (A) Samples[Stat5MKO+GH]: EG003.1-01, EG003.1-02, EG003.1-05
   (B) Samples[Stat5MKO-GH]: EG003.2-04, EG003.2-05, EG003.2-06.

Note: the table for 'EG3.1-test-2+FC' has limited the number of rows of genes from 502 rows to 500 rows with the highest fold-change magnitudes. The corresponding Excel file has all of the data.

mAdb Microarray Retrieval Report - Test Samples

Preface to table