Muscle: EG003.1
(T1+) Stat5MKO+GH vs WT+GH --- fold changes > 2X and p-Value<0.05.
This mAdb-derived analysis report compares two groups of samples (A and B) using the paired t-test followed by a fold-change test with the threshold values listed above. The t-test is only done if are at least two samples/condition. It performs fold-change thresholding in either case. The mean A and mean B values are shown as log2 values in the following table as A Mean and B Mean. If there are not enough samples in either condition A or condition B, it only compares the fold-change (mean A/mean B) computed as the difference between the log2 means shown as A-B Mean Difference in this report - see Data Analysis Methods for more discussion. If the t-test is performed, the p-Value is reported as A-B p-Value. Individual sample expression values are reported as the RMA normalized values not using the log2. The tests, thresholding and mAdb Retrieval Report were generated on the mAdb system for the GSP data and subsequently converted to this Web page.
Clicking on the table entries for Gene, Well ID, and Feature ID
will go to the GeneCard, mAdb Feature Report, and Affymetrix probe database Web page
for that entry. The genes are sorted by A-B Mean Difference with:
(A) Samples[Stat5MKO+GH]: EG003.1-01, EG003.1-02, EG003.1-05
(B) Samples[WT+GH]: EG003.1-03, EG003.1-04, EG003.1-06.
$$LIMITED-ROWS$$
| A | 1 | 06-08-04_Hennighausen_Mouse430_2_KO1 | GSP-EG001 Hennighausen | ||
|---|---|---|---|---|---|
| 1 | A | 2 | 06-08-04_Hennighausen_Mouse430_2_KO2 | GSP-EG001 Hennighausen | |
| 2 | A | 3 | 06-08-04_Hennighausen_Mouse430_2_KO3 | GSP-EG001 Hennighausen | |
| 3 | A | 4 | 06-08-04_Hennighausen_Mouse430_2_WT1 | GSP-EG001 Hennighausen | |
| 4 | A | 5 | 06-08-04_Hennighausen_Mouse430_2_WT2 | GSP-EG001 Hennighausen | |
| 5 | A | 6 | 06-08-04_Hennighausen_Mouse430_2_WT3 | GSP-EG001 Hennighausen | |
| 6 | B | 7 | 02-09-07_Hennighausen_PK_Mouse430_2_M42 | GSP-EG003.1 Hennighausen | |
| 7 | B | 8 | 02-09-07_Hennighausen_PK_Mouse430_2_M43 | GSP-EG003.1 Hennighausen | |
| 8 | B | 9 | 02-09-07_Hennighausen_PK_Mouse430_2_M44 | GSP-EG003.1 Hennighausen | |
| 9 | B | 10 | 02-09-07_Hennighausen_PK_Mouse430_2_M47 | GSP-EG003.1 Hennighausen | |
| 10 | B | 11 | 02-09-07_Hennighausen_PK_Mouse430_2_M48 | GSP-EG003.1 Hennighausen | |
| 11 | B | 12 | 02-09-07_Hennighausen_PK_Mouse430_2_M50 | GSP-EG003.1 Hennighausen | |
| 12 | C | 13 | 06-10-08_Hennighausen_1PK_Mouse430_2_4038WT | GSP-EG003.2 Hennighausen | |
| 13 | C | 14 | 06-10-08_Hennighausen_2PK_Mouse430_2_4060WT | GSP-EG003.2 Hennighausen | |
| 14 | C | 15 | 06-10-08_Hennighausen_3PK_Mouse430_2_4063WT | GSP-EG003.2 Hennighausen | |
| 15 | C | 16 | 06-10-08_Hennighausen_4PK_Mouse430_2_4035KO | GSP-EG003.2 Hennighausen | |
| 16 | C | 17 | 06-10-08_Hennighausen_5PK_Mouse430_2_4036KO | GSP-EG003.2 Hennighausen | |
| 17 | C | 18 | 06-10-08_Hennighausen_6PK_Mouse430_2_4042KO | GSP-EG003.2 Hennighausen | |
| 18 | Gene Property Filtering | ||||
| 19 | 18 arrays and 45101 genes in the input dataset | ||||
| 20 | 18 arrays and 168 genes in the output dataset. | ||||
| 21 | 44933 genes excluded for Well ID not being in local list 'EG3-1-test-1+FC'. | ||||
| 22 | A | 1 | 06-08-04_Hennighausen_Mouse430_2_KO1 | GSP-EG001 Hennighausen |
This Web page was derived in collaboration with GSP consortium members.
Home: jak-stat.nih.gov
Home: Jak-Stat Prospector
Revised: Mon Sep 28 13:56:56 EDT 2009