A	1	02-09-07_Hennighausen_PK_Mouse430_2_M42	GSP-EG003.1 Hennighausen
	A	2	02-09-07_Hennighausen_PK_Mouse430_2_M43	GSP-EG003.1 Hennighausen
	A	3	02-09-07_Hennighausen_PK_Mouse430_2_M48	GSP-EG003.1 Hennighausen
	B	4	02-09-07_Hennighausen_PK_Mouse430_2_M44	GSP-EG003.1 Hennighausen
	B	5	02-09-07_Hennighausen_PK_Mouse430_2_M47	GSP-EG003.1 Hennighausen
	B	6	02-09-07_Hennighausen_PK_Mouse430_2_M50	GSP-EG003.1 Hennighausen
The input data set contained 45101 genes
The filtered output data set contains 76 genes
37427 gene rows removed by Include where <b>A-B T-test p-value (two tailed)</b> <= 0.05 
7598 gene rows removed by Include where <b>A-B Mean Difference</b> <= -1 

A	A	A	B	B	B
02-09-07_Hennighausen_PK_Mouse430_2_M42 GSP-EG003.1 Hennighausen	02-09-07_Hennighausen_PK_Mouse430_2_M43 GSP-EG003.1 Hennighausen	02-09-07_Hennighausen_PK_Mouse430_2_M48 GSP-EG003.1 Hennighausen	02-09-07_Hennighausen_PK_Mouse430_2_M44 GSP-EG003.1 Hennighausen	02-09-07_Hennighausen_PK_Mouse430_2_M47 GSP-EG003.1 Hennighausen	02-09-07_Hennighausen_PK_Mouse430_2_M50 GSP-EG003.1 Hennighausen	A-B p-Value	A-B Mean Difference	A Mean	B Mean	Well ID	Feature ID	Map	mgB37_Probe Chr:Start-Stop	mgB37_Probe Cytoband	mgB37_RefSeq Chr:Start-Stop	mgB37_RefSeq Cytoband	Annotation_Src	UniGene	RefSeq	Refseqs_Hit	geneIDS_Hit	Entrez GeneID	Locus Tag	Gene	Description	BioCarta  Pathways	KEGG Pathways	Gene Ontology Terms	GO Tier2 Component	GO Tier3 Component	GO Tier2 Function	GO Tier3 Function	GO Tier2 Process	GO Tier3 Process
407.9903	406.7446	386.8004	942.3607	894.1517	921.0368	4.1399609e-06	-1.19860	8.64527	9.84388	1343360	1416708_a_at	7 13.0 cM	chr7:31915193-31917633	7 B1	chr7:31915145-31936069	7 B1	RSQ	Mm.27366	NM_027898	1	1	52857		  Gramd1a	GRAM domain containing 1A (Gramd1a), mRNA.			integral to membrane;; membrane	cell;; cell part	cell part;; membrane;; membrane part				
2995.0112	2961.6519	3045.5934	6635.0619	6660.7491	6634.2451	7.1412985e-05	-1.14668	11.55101	12.69769	1343385	1416835_s_at	10 25.0 cM	chr10:40009199-40010422	10 B1	chr10:40007264-40021992	10 B1	RSQ	Mm.253533	NM_009665	5	5	11702		  Amd1	S-adenosylmethionine decarboxylase 1 (Amd1), mRNA.		Arginine and proline metabolism;; Cysteine and methionine metabolism;; Metabolic pathways CLASS Metabolism; Amino Acid Metabolism; Cysteine and methionine metabolism [PATH:mmu00270] Metabolism; Amino Acid Metabolism; Methionine metabolism [PATH:mmu00271] Metabolism; Amino Acid Metabolism; Arginine and proline metabolism [PATH:mmu00330];; Methionine metabolism	adenosylmethionine decarboxylase activity;; carboxy-lyase activity;; in utero embryonic development;; lyase activity;; polyamine biosynthetic process;; protein binding;; spermidine biosynthetic process;; spermine biosynthetic process			binding;; catalytic activity	lyase activity;; protein binding	cellular process;; developmental process;; metabolic process;; multicellular organismal process	biosynthetic process;; cellular metabolic process;; embryonic development;; multicellular organismal development;; nitrogen compound metabolic process;; primary metabolic process
76.3389	89.8983	88.4559	262.7482	224.6651	227.8496	0.00013983873	-1.48988	6.40382	7.89370	1328794	1417312_at	7	chr7:119260710-119261088	7 F1	chr7:119259532-119302571	7 F1	RSQ	Mm.55143	NM_015814	1	1	50781		  Dkk3	dickkopf homolog 3 (Xenopus laevis) (Dkk3), mRNA.			extracellular region;; extracellular space;; multicellular organismal development;; negative regulation of Wnt receptor signaling pathway;; Wnt receptor signaling pathway	extracellular region;; extracellular region part	extracellular region part;; extracellular space			biological regulation;; cellular process;; developmental process;; multicellular organismal process;; negative regulation of biological process;; regulation of biological process	cell communication;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; regulation of biological process;; regulation of cellular process
615.6347	623.0472	604.9297	1620.7427	1626.4259	1625.4179	6.1049745e-05	-1.40226	9.26325	10.66551	1328966	1417522_at	15	chr15:58011931-58012223	15 D1	chr15:58011633-58046433	15 D1	RSQ	Mm.292042	NM_026346	1	1	67731		  Fbxo32	F-box protein 32 (Fbxo32), mRNA.			modification-dependent protein catabolic process;; nucleus;; protein binding	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding	protein binding	cellular process;; metabolic process	catabolic process;; cellular metabolic process;; macromolecule metabolic process;; primary metabolic process
26.8275	24.5152	30.6207	152.6904	106.3417	92.1240	0.0045513571	-2.07162	4.76589	6.83751	1329031	1417597_at	1 30.1 cM	chr1:60826814-60827346	1 C2	chr1:60803231-60830203	1 C2	RSQ	Mm.255003	NM_007642	2	2	12487	CH29-189K17.3	  Cd28	CD28 antigen (Cd28), mRNA.	Antigen Dependent B Cell Activation;; Bystander B Cell Activation;; HIV Induced T Cell Apoptosis;; Role of Tob in T-cell activation;; Selective expression of chemokine receptors during T-cell polarization;; T Cytotoxic Cell Surface Molecules;; T Helper Cell Surface Molecules;; Th1/Th2 Differentiation;; The Co-Stimulatory Signal During T-cell Activation	Allograft rejection;; Autoimmune thyroid disease;; Cell adhesion molecules (CAMs);; Graft-versus-host disease CLASS Environmental Information Processing; Signaling Molecules and Interaction; Cell adhesion molecules (CAMs) [PATH:mmu04514] Cellular Processes; Immune System; T cell receptor signaling pathway [PATH:mmu04660] Human Diseases; Immune Disorders; Systemic lupus erythematosus [PATH:mmu05322] Human Diseases; Immune Disorders; Aut;; Systemic lupus erythematosus;; T cell receptor signaling pathway;; Type I diabetes mellitus	external side of plasma membrane;; external side of plasma membrane;; external side of plasma membrane;; immune response;; induction of apoptosis by extracellular signals;; integral to membrane;; membrane;; negative thymic T cell selection;; plasma membrane;; positive regulation of alpha-beta T cell proliferation;; positive regulation of alpha-beta T cell proliferation;; positive regulation of inflammatory response to antigenic stimulus;; positive regulation of interleukin-2 biosynthetic process;; positive regulation of isotype switching to IgG isotypes;; positive regulation of T cell proliferation;; positive regulation of T cell proliferation;; T cell costimulation;; T cell costimulation	cell;; cell part	cell part;; cell surface;; membrane;; membrane part			biological regulation;; cellular process;; death;; developmental process;; immune system process;; metabolic process;; multicellular organismal process;; positive regulation of biological process;; regulation of biological process;; response to stimulus	anatomical structure development;; biosynthetic process;; cell activation;; cell death;; cell proliferation;; cellular developmental process;; cellular metabolic process;; cytokine production;; immune effector process;; immune response;; immune system development;; leukocyte activation;; lymphocyte costimulation;; macromolecule metabolic process;; multicellular organismal development;; nitrogen compound metabolic process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of developmental process;; positive regulation of immune system process;; positive regulation of metabolic process;; positive regulation of response to stimulus;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process;; regulation of immune system process;; regulation of metabolic process;; regulation of multicellular organismal process;; regulation of response to stimulus;; response to external stimulus;; response to stress;; somatic diversification of immune receptors;; T cell selection
246.7763	268.5551	233.2480	630.5303	733.3004	756.2393	0.00020570579	-1.49984	7.96062	9.46046	1329298	1417929_at	14	chr14:55341124-55341626	14 C3	chr14:55341051-55400723	14 C3	RSQ	Mm.276831	NM_016972	1	1	50934		  Slc7a8	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 (Slc7a8), mRNA.			amine transmembrane transporter activity;; amino acid transmembrane transporter activity;; amino acid transport;; cytoplasm;; integral to membrane;; L-amino acid transmembrane transporter activity;; L-amino acid transport;; membrane;; plasma membrane;; transport	cell;; cell part	cell part;; intracellular;; intracellular part;; membrane;; membrane part	transporter activity	substrate-specific transporter activity;; transmembrane transporter activity	cellular process;; establishment of localization;; localization	establishment of localization;; transmembrane transport;; transport
243.0805	216.2775	222.4566	550.9603	512.3839	535.1430	0.00013744918	-1.23042	7.82647	9.05689	1329435	1418091_at	1	chr1:120581186-120581654	1 E2.3	chr1:120524521-120581745	1 E2.3	RSQ	Mm.24621	NM_023755	1	1	81879		  Tcfcp2l1	transcription factor CP2-like 1 (Tcfcp2l1), mRNA.			cell morphogenesis;; cytoplasm;; cytoplasm organization;; determination of adult life span;; DNA binding;; epithelial cell maturation;; general transcriptional repressor activity;; membrane;; negative regulation of transcription from RNA polymerase II promoter;; nucleus;; positive regulation of growth;; regulation of transcription, DNA-dependent;; salivary gland development;; transcription;; transcription factor complex	cell;; cell part;; macromolecular complex;; membrane-enclosed lumen;; organelle;; organelle part	cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane;; membrane-bounded organelle;; organelle lumen;; organelle part;; protein complex	binding;; transcription regulator activity	nucleic acid binding;; transcription repressor activity	biological regulation;; cellular component organization;; cellular process;; developmental process;; growth;; metabolic process;; multicellular organismal process;; negative regulation of biological process;; positive regulation of biological process;; regulation of biological process	aging;; anatomical structure development;; anatomical structure morphogenesis;; biosynthetic process;; cellular component morphogenesis;; cellular developmental process;; cellular metabolic process;; cytoplasm organization;; determination of adult life span;; developmental maturation;; macromolecule metabolic process;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of metabolic process;; nitrogen compound metabolic process;; positive regulation of biological process;; positive regulation of growth;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of growth;; regulation of metabolic process
248.9299	268.4852	246.2027	653.5010	643.1115	725.4607	6.3920059e-05	-1.40391	7.99067	9.39457	1343687	1418507_s_at	10 C2|10 52.0 cM	chr10:94874243-94874582	10 C2			UGA	Mm.474283				216233		  Socs2	Suppressor of cytokine signaling 2 (Socs2), mRNA		Insulin signaling pathway;; Jak-STAT signaling pathway;; Type II diabetes mellitus CLASS Environmental Information Processing; Signal Transduction; Jak-STAT signaling pathway [PATH:mmu04630] Cellular Processes; Endocrine System; Insulin signaling pathway [PATH:mmu04910] Human Diseases; Metabolic Disorders; Type II diabetes mellitus [PATH:mmu04930]	growth hormone receptor binding;; intracellular signaling cascade;; lactation;; lactation;; mammary gland alveolus development;; mammary gland alveolus development;; modification-dependent protein catabolic process;; negative regulation of JAK-STAT cascade;; negative regulation of multicellular organism growth;; negative regulation of multicellular organism growth;; negative regulation of signal transduction;; positive regulation of neuron differentiation;; regulation of growth;; regulation of multicellular organism growth			binding	protein binding	biological regulation;; cellular process;; developmental process;; growth;; metabolic process;; multicellular organismal process;; negative regulation of biological process;; positive regulation of biological process;; regulation of biological process;; reproduction;; reproductive process	anatomical structure development;; catabolic process;; cell communication;; cellular developmental process;; cellular metabolic process;; macromolecule metabolic process;; multicellular organism growth;; multicellular organism reproduction;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of growth;; negative regulation of multicellular organismal process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of developmental process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process;; regulation of growth;; regulation of multicellular organismal process;; reproductive process;; reproductive process in a multicellular organism
164.7075	175.9609	184.0654	413.8376	349.4793	397.5633	0.00050990983	-1.14336	7.44898	8.59234	1330166	1418981_at	9 1.11 cM	chr9:5354642-5371964	9 A1	chr9:5345475-5373034	9 A1	RSQ	Mm.42163	NM_009808	2	2	12364		  Casp12	caspase 12 (Casp12), mRNA.		Alzheimer's disease;; Amyotrophic lateral sclerosis (ALS);; Apoptosis;; Prion diseases CLASS Cellular Processes; Cell Growth and Death; Apoptosis [PATH:mmu04210] Human Diseases; Neurodegenerative Diseases; Alzheimer's disease [PATH:mmu05010] Human Diseases; Neurodegenerative Diseases; Amyotrophic lateral sclerosis (ALS) [PATH:mmu05014] Human Diseases; Neurodegenerative Diseases; Prion diseases [PATH:mmu05020]	apoptosis;; apoptosis in response to endoplasmic reticulum stress;; cysteine-type endopeptidase activity;; cysteine-type peptidase activity;; endoplasmic reticulum;; endoplasmic reticulum unfolded protein response;; hydrolase activity;; induction of apoptosis;; intracellular;; peptidase activity;; protein binding;; proteolysis;; regulation of apoptosis;; virus-infected cell apoptosis	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; catalytic activity	hydrolase activity;; protein binding	biological regulation;; cellular process;; death;; developmental process;; metabolic process;; positive regulation of biological process;; regulation of biological process;; response to stimulus	catabolic process;; cell communication;; cell death;; cellular response to stimulus;; macromolecule metabolic process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of developmental process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process;; response to biotic stimulus;; response to chemical stimulus;; response to stress
1486.8186	1408.2953	1430.5068	3208.6653	2981.0044	2903.3414	0.00017987325	-1.07093	10.49335	11.56428	1331338	1420657_at	7 50.0 cM	chr7:107634360-107634874	7 E3	chr7:107621499-107634941	7 E3	RSQ	Mm.6254	NM_009464	1	1	22229		  Ucp3	uncoupling protein 3 (mitochondrial, proton carrier) (Ucp3), nuclear gene encoding mitochondrial protein, mRNA.			binding;; fatty acid metabolic process;; integral to membrane;; membrane;; mitochondrial inner membrane;; mitochondrial transport;; mitochondrion;; mitochondrion;; oxidative phosphorylation uncoupler activity;; response to superoxide;; transport	cell;; cell part;; envelope;; organelle;; organelle part	cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane;; membrane part;; membrane-bounded organelle;; organelle envelope;; organelle membrane;; organelle part	binding;; transporter activity	transmembrane transporter activity	cellular process;; establishment of localization;; localization;; metabolic process;; response to stimulus	cellular localization;; cellular metabolic process;; establishment of localization;; establishment of localization in cell;; primary metabolic process;; response to chemical stimulus;; response to stress;; transport
200.1609	167.7075	174.5408	560.8443	521.5580	507.9575	0.00031706532	-1.55482	7.49408	9.04890	1344533	1422102_a_at	11 60.5 cM	chr11:100644325-100648678	11 D	chr11:100642044-100711899	11 D	RSQ	Mm.34064	NM_001113563	2	1	20851	RP23-279L23.3	  Stat5b	signal transducer and activator of transcription 5B (Stat5b), mRNA.		Acute myeloid leukemia CLASS Environmental Information Processing; Signal Transduction; ErbB signaling pathway [PATH:mmu04012] Environmental Information Processing; Signal Transduction; Jak-STAT signaling pathway [PATH:mmu04630] Cellular Processes; Immune System; Chemokine signaling pathway [PATH:mmu04062] Human Diseases; Cancers; Pathways in cancer [PA;; Chemokine signaling pathway;; Chronic myeloid leukemia;; ErbB signaling pathway;; Jak-STAT signaling pathway;; Pathways in cancer	calcium ion binding;; cytokine-mediated signaling pathway;; cytoplasm;; development of secondary female sexual characteristics;; development of secondary male sexual characteristics;; development of secondary male sexual characteristics;; DNA binding;; female pregnancy;; female pregnancy;; JAK-STAT cascade;; lactation;; lipid storage;; luteinization;; natural killer cell differentiation;; negative regulation of apoptosis;; negative regulation of erythrocyte differentiation;; nucleus;; Peyer's patch development;; positive regulation of activated T cell proliferation;; positive regulation of activated T cell proliferation;; positive regulation of B cell differentiation;; positive regulation of cell proliferation;; positive regulation of gamma-delta T cell differentiation;; positive regulation of inflammatory response;; positive regulation of interleukin-2 biosynthetic process;; positive regulation of lymphocyte differentiation;; positive regulation of mitotic cell cycle;; positive regulation of multicellular organism growth;; positive regulation of multicellular organism growth;; positive regulation of natural killer cell differentiation;; positive regulation of natural killer cell mediated cytotoxicity;; positive regulation of natural killer cell proliferation;; positive regulation of survival gene product expression;; positive regulation of transcription from RNA polymerase II promoter;; positive regulation of transcription from RNA polymerase II promoter;; progesterone metabolic process;; protein binding;; regulation of cell adhesion;; regulation of epithelial cell differentiation;; regulation of steroid metabolic process;; regulation of transcription from RNA polymerase II promoter;; regulation of transcription, DNA-dependent;; response to interleukin-15;; response to interleukin-2;; response to interleukin-4;; sex differentiation;; signal transducer activity;; signal transduction;; T cell differentiation in the thymus;; T cell homeostasis;; transcription;; transcription factor activity	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; molecular transducer activity;; transcription regulator activity	ion binding;; nucleic acid binding;; protein binding;; signal transducer activity;; transcription factor activity	biological adhesion;; biological regulation;; cell killing;; cellular process;; death;; developmental process;; growth;; immune system process;; localization;; metabolic process;; multi-organism process;; multicellular organismal process;; negative regulation of biological process;; positive regulation of biological process;; regulation of biological process;; reproduction;; reproductive process;; response to stimulus;; rhythmic process	anatomical structure development;; anatomical structure morphogenesis;; biosynthetic process;; cell activation;; cell adhesion;; cell communication;; cell cycle;; cell death;; cell proliferation;; cellular developmental process;; cellular metabolic process;; cytokine production;; female pregnancy;; hormone metabolic process;; immune effector process;; immune response;; immune system development;; leukocyte activation;; leukocyte homeostasis;; leukocyte mediated cytotoxicity;; macromolecule localization;; macromolecule metabolic process;; multicellular organism growth;; multicellular organism reproduction;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of developmental process;; nitrogen compound metabolic process;; ovulation cycle;; ovulation cycle process;; positive regulation of biological process;; positive regulation of cell killing;; positive regulation of cellular process;; positive regulation of developmental process;; positive regulation of growth;; positive regulation of immune system process;; positive regulation of metabolic process;; positive regulation of multicellular organismal process;; positive regulation of response to stimulus;; primary metabolic process;; regulation of biological process;; regulation of biological quality;; regulation of cell killing;; regulation of cellular process;; regulation of developmental process;; regulation of growth;; regulation of homeostatic process;; regulation of immune system process;; regulation of metabolic process;; regulation of multicellular organismal process;; regulation of response to stimulus;; reproductive developmental process;; reproductive process;; reproductive process in a multicellular organism;; response to chemical stimulus;; response to external stimulus;; response to stress
195.1879	183.1424	193.3896	842.1944	887.5067	963.3258	5.4362387e-05	-2.23420	7.57364	9.80783	1344534	1422103_a_at	11 60.5 cM	chr11:100642207-100642625	11 D	chr11:100642044-100711899	11 D	RSQ	Mm.34064	NM_001113563	2	1	20851	RP23-279L23.3	  Stat5b	signal transducer and activator of transcription 5B (Stat5b), mRNA.		Acute myeloid leukemia CLASS Environmental Information Processing; Signal Transduction; ErbB signaling pathway [PATH:mmu04012] Environmental Information Processing; Signal Transduction; Jak-STAT signaling pathway [PATH:mmu04630] Cellular Processes; Immune System; Chemokine signaling pathway [PATH:mmu04062] Human Diseases; Cancers; Pathways in cancer [PA;; Chemokine signaling pathway;; Chronic myeloid leukemia;; ErbB signaling pathway;; Jak-STAT signaling pathway;; Pathways in cancer	calcium ion binding;; cytokine-mediated signaling pathway;; cytoplasm;; development of secondary female sexual characteristics;; development of secondary male sexual characteristics;; development of secondary male sexual characteristics;; DNA binding;; female pregnancy;; female pregnancy;; JAK-STAT cascade;; lactation;; lipid storage;; luteinization;; natural killer cell differentiation;; negative regulation of apoptosis;; negative regulation of erythrocyte differentiation;; nucleus;; Peyer's patch development;; positive regulation of activated T cell proliferation;; positive regulation of activated T cell proliferation;; positive regulation of B cell differentiation;; positive regulation of cell proliferation;; positive regulation of gamma-delta T cell differentiation;; positive regulation of inflammatory response;; positive regulation of interleukin-2 biosynthetic process;; positive regulation of lymphocyte differentiation;; positive regulation of mitotic cell cycle;; positive regulation of multicellular organism growth;; positive regulation of multicellular organism growth;; positive regulation of natural killer cell differentiation;; positive regulation of natural killer cell mediated cytotoxicity;; positive regulation of natural killer cell proliferation;; positive regulation of survival gene product expression;; positive regulation of transcription from RNA polymerase II promoter;; positive regulation of transcription from RNA polymerase II promoter;; progesterone metabolic process;; protein binding;; regulation of cell adhesion;; regulation of epithelial cell differentiation;; regulation of steroid metabolic process;; regulation of transcription from RNA polymerase II promoter;; regulation of transcription, DNA-dependent;; response to interleukin-15;; response to interleukin-2;; response to interleukin-4;; sex differentiation;; signal transducer activity;; signal transduction;; T cell differentiation in the thymus;; T cell homeostasis;; transcription;; transcription factor activity	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; molecular transducer activity;; transcription regulator activity	ion binding;; nucleic acid binding;; protein binding;; signal transducer activity;; transcription factor activity	biological adhesion;; biological regulation;; cell killing;; cellular process;; death;; developmental process;; growth;; immune system process;; localization;; metabolic process;; multi-organism process;; multicellular organismal process;; negative regulation of biological process;; positive regulation of biological process;; regulation of biological process;; reproduction;; reproductive process;; response to stimulus;; rhythmic process	anatomical structure development;; anatomical structure morphogenesis;; biosynthetic process;; cell activation;; cell adhesion;; cell communication;; cell cycle;; cell death;; cell proliferation;; cellular developmental process;; cellular metabolic process;; cytokine production;; female pregnancy;; hormone metabolic process;; immune effector process;; immune response;; immune system development;; leukocyte activation;; leukocyte homeostasis;; leukocyte mediated cytotoxicity;; macromolecule localization;; macromolecule metabolic process;; multicellular organism growth;; multicellular organism reproduction;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of developmental process;; nitrogen compound metabolic process;; ovulation cycle;; ovulation cycle process;; positive regulation of biological process;; positive regulation of cell killing;; positive regulation of cellular process;; positive regulation of developmental process;; positive regulation of growth;; positive regulation of immune system process;; positive regulation of metabolic process;; positive regulation of multicellular organismal process;; positive regulation of response to stimulus;; primary metabolic process;; regulation of biological process;; regulation of biological quality;; regulation of cell killing;; regulation of cellular process;; regulation of developmental process;; regulation of growth;; regulation of homeostatic process;; regulation of immune system process;; regulation of metabolic process;; regulation of multicellular organismal process;; regulation of response to stimulus;; reproductive developmental process;; reproductive process;; reproductive process in a multicellular organism;; response to chemical stimulus;; response to external stimulus;; response to stress
139.0409	144.9107	141.4038	338.6226	318.3671	281.5625	0.0033455627	-1.13778	7.14735	8.28513	1333713	1423825_at	3 H4	chr3:159598126-159598647	3 H4			UGA	Mm.6766				68151		  Gpr177	G protein-coupled receptor 177 (Gpr177), mRNA			integral to membrane;; membrane	cell;; cell part	cell part;; membrane;; membrane part				
740.9057	722.6335	706.3995	1643.5945	1548.8396	1452.3215	0.0006813956	-1.09638	9.49820	10.59459	1334205	1424457_at	18 B2	chr18:36830844-36834637	18 B2			UG5	Mm.89673				225372		  Apbb3	Amyloid beta (A4) precursor protein-binding, family B, member 3 (Apbb3), mRNA			negative regulation of apoptosis;; protein binding			binding	protein binding	biological regulation;; cellular process;; death;; developmental process;; negative regulation of biological process;; regulation of biological process	cell death;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of developmental process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process
953.5615	1016.9887	1015.2672	2841.0170	2711.1166	2667.8203	4.1933681e-06	-1.46113	9.95830	11.41944	1334422	1424735_at	2	chr2:32270714-32271132	2 B	chr2:32270006-32306939	2 B	RSQ	Mm.37395	NM_146118	1	1	227731	RP23-255P20.1	  Slc25a25	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 (Slc25a25), nuclear gene encoding mitochondrial protein, mRNA.			binding;; calcium ion binding;; integral to membrane;; membrane;; mitochondrial inner membrane;; mitochondrion;; transport	cell;; cell part;; envelope;; organelle;; organelle part	cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane;; membrane part;; membrane-bounded organelle;; organelle envelope;; organelle membrane;; organelle part	binding	ion binding	establishment of localization;; localization	establishment of localization;; transport
67.1359	51.3696	47.0724	489.9384	431.6515	377.0922	0.00018664134	-2.98010	5.76955	8.74965	1345143	1424795_a_at	2	chr2:30651685-30653425	2 B	chr2:30651082-30657227	2 B	RSQ	Mm.34166	NM_198000	1	1	73598	RP23-221O14.1	  1700001O22Rik	RIKEN cDNA 1700001O22 gene (1700001O22Rik), mRNA.									
47.3997	39.6747	37.3176	120.2125	113.8210	120.0190	0.0030043878	-1.51615	5.36625	6.88239	1334673	1425079_at	8	chr8:72602280-72603860	8 B3.3	chr8:72596830-72603951	8 B3.3	RSQ	Mm.37974	NM_181540	1	1	107770		  Tm6sf2	transmembrane 6 superfamily member 2 (Tm6sf2), mRNA.			integral to membrane;; membrane	cell;; cell part	cell part;; membrane;; membrane part				
273.8139	269.4133	281.7780	547.2341	557.8625	554.3976	4.3575697e-05	-1.00847	8.10305	9.11152	1345355	1425400_a_at	4 D2.2|4 56.65 cM	chr4:120339825-120340283	4 D2.2			UGA	Mm.272646				56222	RP23-18M2.2	  Cited4	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4, mRNA (cDNA clone IMAGE:3670674)			cytoplasm;; nucleus;; positive regulation of transcription;; regulation of transcription;; regulation of transcription, DNA-dependent;; transcription;; transcription coactivator activity;; transcription coactivator activity;; transcription regulator activity	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; transcription regulator activity	protein binding;; transcription activator activity;; transcription cofactor activity	biological regulation;; cellular process;; metabolic process;; positive regulation of biological process;; regulation of biological process	biosynthetic process;; cellular metabolic process;; macromolecule metabolic process;; nitrogen compound metabolic process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of metabolic process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of metabolic process
73.1578	76.2143	75.9593	269.5804	235.2393	240.4633	0.00050866253	-1.72338	6.23069	7.95408	1335161	1425965_at	5			chr5:125866334-125870928	5 G1.1	RSQ		XM_001479835	1	1	100048105		  LOC100048105	PREDICTED: similar to Ubc protein, transcript variant 2 (LOC100048105), mRNA.		PPAR signaling pathway CLASS Cellular Processes; Endocrine System; PPAR signaling pathway [PATH:mmu03320]							
78.5539	87.4236	84.9827	212.5964	191.2307	177.5100	0.00050009481	-1.20941	6.38489	7.59430	1335714	1426858_at	1 E2.3|1 64.1 cM	chr1:121312137-121312619	1 E2.3			UGA	Mm.3092				16324		  Inhbb	Inhibin beta-B subunit		Cytokine-cytokine receptor interaction;; TGF-beta signaling pathway CLASS Environmental Information Processing; Signal Transduction; TGF-beta signaling pathway [PATH:mmu04350] Environmental Information Processing; Signaling Molecules and Interaction; Cytokine-cytokine receptor interaction [PATH:mmu04060]	extracellular region;; growth;; growth factor activity;; hormone activity;; negative regulation of insulin secretion	extracellular region		binding	protein binding	biological regulation;; cellular process;; establishment of localization;; growth;; localization;; negative regulation of biological process;; regulation of biological process	cell communication;; cellular localization;; establishment of localization;; establishment of localization in cell;; generation of a signal involved in cell-cell signaling;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of transport;; regulation of biological process;; regulation of biological quality;; regulation of cellular process;; regulation of localization;; secretion by cell;; transport
65.4287	77.2778	72.9969	153.1302	145.3725	149.3902	0.0023140757	-1.05719	6.16453	7.22172	1335795	1426959_at	16	chr16:31458401-31458555	16 B2	chr16:31422382-31458987	16 B2	RSQ	Mm.293470	NM_175177	2	1	71911		  Bdh1	3-hydroxybutyrate dehydrogenase, type 1 (Bdh1), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.		Butanoate metabolism;; Metabolic pathways CLASS Metabolism; Carbohydrate Metabolism; Butanoate metabolism [PATH:mmu00650] Metabolism; Lipid Metabolism; Synthesis and degradation of ketone bodies [PATH:mmu00072];; Synthesis and degradation of ketone bodies	3-hydroxybutyrate dehydrogenase activity;; binding;; catalytic activity;; metabolic process;; mitochondrial inner membrane;; mitochondrion;; oxidation reduction;; oxidoreductase activity	cell;; cell part;; envelope;; organelle;; organelle part	cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane;; membrane-bounded organelle;; organelle envelope;; organelle membrane;; organelle part	binding;; catalytic activity	oxidoreductase activity	metabolic process	oxidation reduction
92.0472	89.8266	85.0148	191.7828	181.2917	171.0661	0.00012462914	-1.02696	6.47434	7.50130	1335963	1427167_at	X E3	chrX:131230701-131230976	X E3			UGA	Mm.31961				102910		  Armcx4	Armadillo repeat containing, X-linked 4, mRNA (cDNA clone IMAGE:5374915)									
1345.0827	1318.0969	1323.4778	3270.1303	3132.1231	3324.6294	9.9677398e-05	-1.28640	10.37595	11.66235	1346052	1427329_a_at	12 F1-2|12 58.0 cM	chr12:114659183-114659651	12 F1			UGA	Mm.342177				16019		  Igh-6	Immunoglobulin heavy chain complex, mRNA (cDNA clone MGC:28019 IMAGE:3660622)			activation of MAPK activity;; antigen binding;; antigen processing and presentation;; B cell receptor complex;; B cell receptor signaling pathway;; early endosome to late endosome transport;; external side of plasma membrane;; extracellular region;; humoral immune response mediated by circulating immunoglobulin;; immunoglobulin complex, circulating;; immunoglobulin mediated immune response;; integral to membrane;; membrane;; perinuclear region of cytoplasm;; plasma membrane;; positive regulation of B cell activation;; positive regulation of B cell proliferation;; positive regulation of endocytosis;; positive regulation of MAPKKK cascade;; positive regulation of peptidyl-tyrosine phosphorylation;; protein binding;; transmembrane receptor activity	cell;; cell part;; extracellular region;; extracellular region part;; macromolecular complex	cell part;; cell surface;; extracellular region part;; extracellular space;; immunoglobulin complex, circulating;; intracellular;; intracellular part;; membrane;; membrane part;; protein complex	binding;; molecular transducer activity	antigen binding;; protein binding;; signal transducer activity	biological regulation;; cellular component organization;; cellular process;; establishment of localization;; immune system process;; localization;; metabolic process;; positive regulation of biological process;; regulation of biological process;; response to stimulus	activation of immune response;; antigen processing and presentation;; cell activation;; cell communication;; cell proliferation;; cellular localization;; cellular metabolic process;; establishment of localization;; establishment of localization in cell;; immune effector process;; immune response;; leukocyte activation;; macromolecule metabolic process;; membrane organization;; positive regulation of biological process;; positive regulation of cellular component organization;; positive regulation of cellular process;; positive regulation of immune system process;; positive regulation of metabolic process;; positive regulation of response to stimulus;; positive regulation of transport;; primary metabolic process;; regulation of biological process;; regulation of cellular component organization;; regulation of cellular process;; regulation of immune system process;; regulation of localization;; regulation of metabolic process;; regulation of molecular function;; regulation of response to stimulus;; transport;; vesicle-mediated transport
334.9651	362.4043	361.0147	774.6081	726.0298	784.7735	2.65514e-05	-1.11070	8.46175	9.57245	1346060	1427351_s_at	12 F1-2|12 58.0 cM	chr12:114659066-114659146	12 F1			UGA	Mm.342177				16019		  Igh-6	Immunoglobulin heavy chain complex, mRNA (cDNA clone MGC:28019 IMAGE:3660622)			activation of MAPK activity;; antigen binding;; antigen processing and presentation;; B cell receptor complex;; B cell receptor signaling pathway;; early endosome to late endosome transport;; external side of plasma membrane;; extracellular region;; humoral immune response mediated by circulating immunoglobulin;; immunoglobulin complex, circulating;; immunoglobulin mediated immune response;; integral to membrane;; membrane;; perinuclear region of cytoplasm;; plasma membrane;; positive regulation of B cell activation;; positive regulation of B cell proliferation;; positive regulation of endocytosis;; positive regulation of MAPKKK cascade;; positive regulation of peptidyl-tyrosine phosphorylation;; protein binding;; transmembrane receptor activity	cell;; cell part;; extracellular region;; extracellular region part;; macromolecular complex	cell part;; cell surface;; extracellular region part;; extracellular space;; immunoglobulin complex, circulating;; intracellular;; intracellular part;; membrane;; membrane part;; protein complex	binding;; molecular transducer activity	antigen binding;; protein binding;; signal transducer activity	biological regulation;; cellular component organization;; cellular process;; establishment of localization;; immune system process;; localization;; metabolic process;; positive regulation of biological process;; regulation of biological process;; response to stimulus	activation of immune response;; antigen processing and presentation;; cell activation;; cell communication;; cell proliferation;; cellular localization;; cellular metabolic process;; establishment of localization;; establishment of localization in cell;; immune effector process;; immune response;; leukocyte activation;; macromolecule metabolic process;; membrane organization;; positive regulation of biological process;; positive regulation of cellular component organization;; positive regulation of cellular process;; positive regulation of immune system process;; positive regulation of metabolic process;; positive regulation of response to stimulus;; positive regulation of transport;; primary metabolic process;; regulation of biological process;; regulation of cellular component organization;; regulation of cellular process;; regulation of immune system process;; regulation of localization;; regulation of metabolic process;; regulation of molecular function;; regulation of response to stimulus;; transport;; vesicle-mediated transport
132.7359	136.8830	114.0280	336.8695	369.3644	424.8182	0.00030105915	-1.55773	6.99415	8.55188	1336133	1427384_at	2 H2	chr2:160772766-160773158	2 H2			UGA	Mm.122738				71389	RP23-384K10.1	  Chd6	Chromodomain helicase DNA binding protein 6, mRNA (cDNA clone IMAGE:3597702)			helicase activity;; nucleus	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	catalytic activity	hydrolase activity		
20.9009	20.5427	22.6625	93.2300	94.2457	122.9824	0.0014649411	-2.26503	4.41609	6.68113	1336340	1427722_at	6			chr6:137932110-138021719	6 G1	RSQ	Mm.269823	NM_177787	1	1	277898		  Slc15a5	solute carrier family 15, member 5 (Slc15a5), mRNA.			integral to membrane;; membrane;; oligopeptide transport;; peptide transport;; protein transport;; symporter activity;; transport;; transporter activity	cell;; cell part	cell part;; membrane;; membrane part	transporter activity	transmembrane transporter activity	establishment of localization;; localization	establishment of localization;; establishment of protein localization;; macromolecule localization;; transport
2022.3901	2068.3186	2083.5964	6563.1989	6610.9871	6908.7095	5.2878803e-06	-1.70136	11.00698	12.70834	1336689	1428306_at	10	chr10:59412481-59412957	10 B4	chr10:59412422-59414518	10 B4	RSQ	Mm.21697	NM_029083	1	1	74747		  Ddit4	DNA-damage-inducible transcript 4 (Ddit4), mRNA.		mTOR signaling pathway CLASS Environmental Information Processing; Signal Transduction; mTOR signaling pathway [PATH:mmu04150]	apoptosis;; cytoplasm;; negative regulation of signal transduction	cell;; cell part	cell part;; intracellular;; intracellular part			biological regulation;; cellular process;; death;; negative regulation of biological process;; regulation of biological process	cell communication;; cell death;; negative regulation of biological process;; negative regulation of cellular process;; regulation of biological process;; regulation of cellular process
284.7408	257.7510	262.5376	1491.9889	1412.7241	1337.1505	2.9695035e-06	-2.39750	8.06657	10.46408	1346626	1431213_a_at	8					UGA	Mm.463370						  	Transcribed locus, weakly similar to XP_001379802.1 PREDICTED: similar to pol protein [Monodelphis domestica]									
549.7658	560.6155	504.7480	2143.1672	2100.7630	2175.6269	0.00018455543	-1.99216	9.07099	11.06315	1347360	1436689_a_at	1	chr1:169298245-169298401	1 H2.3	chr1:169280121-169298661	1 H2.3	RSQ	Mm.330055	NM_019993	1	1	56752		  Aldh9a1	aldehyde dehydrogenase 9, subfamily A1 (Aldh9a1), mRNA.		3-Chloroacrylic acid degradation;; Arginine and proline metabolism;; Ascorbate and aldarate metabolism;; beta-Alanine metabolism;; Butanoate metabolism;; Fatty acid metabolism;; Glycerolipid metabolism;; Glycolysis / Gluconeogenesis;; Histidine metabolism;; Limonene and pinene degradation;; Lysine degradation;; Metabolic pathways CLASS Metabolism; Carbohydrate Metabolism; Glycolysis / Gluconeogenesis [PATH:mmu00010] Metabolism; Carbohydrate Metabolism; Ascorbate and aldarate metabolism [PATH:mmu00053] Metabolism; Carbohydrate Metabolism; Pyruvate metabolism [PATH:mmu00620] Metabolism; Carbohydrate Metabolism; Propanoate metabolism [PATH:mmu00640] Metabolism; C;; Propanoate metabolism;; Pyruvate metabolism;; Tryptophan metabolism;; Valine, leucine and isoleucine degradation	4-trimethylammoniobutyraldehyde dehydrogenase activity;; aldehyde dehydrogenase (NAD) activity;; carnitine metabolic process;; cytoplasm;; cytosol;; metabolic process;; oxidation reduction;; oxidoreductase activity;; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	cell;; cell part	cell part;; intracellular;; intracellular part	catalytic activity	oxidoreductase activity	cellular process;; metabolic process	cellular metabolic process;; nitrogen compound metabolic process;; oxidation reduction;; primary metabolic process
51.9557	61.4238	54.4551	152.8239	135.7862	146.7140	0.00020118959	-1.37695	5.80231	7.17926	1338084	1437025_at	1 30.1 cM	chr1:60829610-60829918	1 C2	chr1:60803231-60830203	1 C2	RSQ	Mm.255003	NM_007642	2	2	12487	CH29-189K17.3	  Cd28	CD28 antigen (Cd28), mRNA.	Antigen Dependent B Cell Activation;; Bystander B Cell Activation;; HIV Induced T Cell Apoptosis;; Role of Tob in T-cell activation;; Selective expression of chemokine receptors during T-cell polarization;; T Cytotoxic Cell Surface Molecules;; T Helper Cell Surface Molecules;; Th1/Th2 Differentiation;; The Co-Stimulatory Signal During T-cell Activation	Allograft rejection;; Autoimmune thyroid disease;; Cell adhesion molecules (CAMs);; Graft-versus-host disease CLASS Environmental Information Processing; Signaling Molecules and Interaction; Cell adhesion molecules (CAMs) [PATH:mmu04514] Cellular Processes; Immune System; T cell receptor signaling pathway [PATH:mmu04660] Human Diseases; Immune Disorders; Systemic lupus erythematosus [PATH:mmu05322] Human Diseases; Immune Disorders; Aut;; Systemic lupus erythematosus;; T cell receptor signaling pathway;; Type I diabetes mellitus	external side of plasma membrane;; external side of plasma membrane;; external side of plasma membrane;; immune response;; induction of apoptosis by extracellular signals;; integral to membrane;; membrane;; negative thymic T cell selection;; plasma membrane;; positive regulation of alpha-beta T cell proliferation;; positive regulation of alpha-beta T cell proliferation;; positive regulation of inflammatory response to antigenic stimulus;; positive regulation of interleukin-2 biosynthetic process;; positive regulation of isotype switching to IgG isotypes;; positive regulation of T cell proliferation;; positive regulation of T cell proliferation;; T cell costimulation;; T cell costimulation	cell;; cell part	cell part;; cell surface;; membrane;; membrane part			biological regulation;; cellular process;; death;; developmental process;; immune system process;; metabolic process;; multicellular organismal process;; positive regulation of biological process;; regulation of biological process;; response to stimulus	anatomical structure development;; biosynthetic process;; cell activation;; cell death;; cell proliferation;; cellular developmental process;; cellular metabolic process;; cytokine production;; immune effector process;; immune response;; immune system development;; leukocyte activation;; lymphocyte costimulation;; macromolecule metabolic process;; multicellular organismal development;; nitrogen compound metabolic process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of developmental process;; positive regulation of immune system process;; positive regulation of metabolic process;; positive regulation of response to stimulus;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process;; regulation of immune system process;; regulation of metabolic process;; regulation of multicellular organismal process;; regulation of response to stimulus;; response to external stimulus;; response to stress;; somatic diversification of immune receptors;; T cell selection
237.6797	244.9858	272.6434	1031.1579	993.4510	956.7375	8.6036817e-05	-1.98268	7.97343	9.95611	1347565	1437398_a_at	1	chr1:169297696-169298074	1 H2.3	chr1:169280121-169298661	1 H2.3	RSQ	Mm.330055	NM_019993	1	1	56752		  Aldh9a1	aldehyde dehydrogenase 9, subfamily A1 (Aldh9a1), mRNA.		3-Chloroacrylic acid degradation;; Arginine and proline metabolism;; Ascorbate and aldarate metabolism;; beta-Alanine metabolism;; Butanoate metabolism;; Fatty acid metabolism;; Glycerolipid metabolism;; Glycolysis / Gluconeogenesis;; Histidine metabolism;; Limonene and pinene degradation;; Lysine degradation;; Metabolic pathways CLASS Metabolism; Carbohydrate Metabolism; Glycolysis / Gluconeogenesis [PATH:mmu00010] Metabolism; Carbohydrate Metabolism; Ascorbate and aldarate metabolism [PATH:mmu00053] Metabolism; Carbohydrate Metabolism; Pyruvate metabolism [PATH:mmu00620] Metabolism; Carbohydrate Metabolism; Propanoate metabolism [PATH:mmu00640] Metabolism; C;; Propanoate metabolism;; Pyruvate metabolism;; Tryptophan metabolism;; Valine, leucine and isoleucine degradation	4-trimethylammoniobutyraldehyde dehydrogenase activity;; aldehyde dehydrogenase (NAD) activity;; carnitine metabolic process;; cytoplasm;; cytosol;; metabolic process;; oxidation reduction;; oxidoreductase activity;; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	cell;; cell part	cell part;; intracellular;; intracellular part	catalytic activity	oxidoreductase activity	cellular process;; metabolic process	cellular metabolic process;; nitrogen compound metabolic process;; oxidation reduction;; primary metabolic process
1050.2375	1121.8854	1151.9891	2694.9050	2752.8130	2685.5082	0.00042828507	-1.29186	10.11271	11.40456	1338746	1448181_at	6	chr6:90424643-90425023	6 D1	chr6:90412619-90425203	6 D1	RSQ	Mm.41389	NM_023184	1	1	66277		  Klf15	Kruppel-like factor 15 (Klf15), mRNA.			DNA binding;; DNA binding;; glucose transport;; intracellular;; metal ion binding;; nucleic acid binding;; nucleus;; positive regulation of transcription, DNA-dependent;; protein binding;; regulation of transcription, DNA-dependent;; transcription;; transcription factor activity;; zinc ion binding	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; transcription regulator activity	ion binding;; nucleic acid binding;; protein binding;; transcription factor activity	biological regulation;; cellular process;; establishment of localization;; localization;; metabolic process;; positive regulation of biological process;; regulation of biological process	biosynthetic process;; cellular metabolic process;; establishment of localization;; macromolecule metabolic process;; nitrogen compound metabolic process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of metabolic process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of metabolic process;; transport
106.7986	110.3035	111.6506	251.0973	183.4840	241.8198	0.017327606	-1.02749	6.77564	7.80313	1339128	1448669_at	7	chr7:119259868-119260122	7 F1	chr7:119259532-119302571	7 F1	RSQ	Mm.55143	NM_015814	1	1	50781		  Dkk3	dickkopf homolog 3 (Xenopus laevis) (Dkk3), mRNA.			extracellular region;; extracellular space;; multicellular organismal development;; negative regulation of Wnt receptor signaling pathway;; Wnt receptor signaling pathway	extracellular region;; extracellular region part	extracellular region part;; extracellular space			biological regulation;; cellular process;; developmental process;; multicellular organismal process;; negative regulation of biological process;; regulation of biological process	cell communication;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; regulation of biological process;; regulation of cellular process
60.0072	57.7634	56.7346	126.2640	107.7231	117.4833	0.0018003748	-1.00750	5.86177	6.86927	1339138	1448680_at	12 51.0 cM	chr12:105133323-105135281	12 E	chr12:105133135-105143160	12 E	RSQ	Mm.439694	NM_009245	2	2	20702		  Serpina1c	serine (or cysteine) peptidase inhibitor, clade A, member 1C (Serpina1c), mRNA.			endopeptidase inhibitor activity;; extracellular region;; protein amino acid N-linked glycosylation;; protein binding;; response to cytokine stimulus;; response to peptide hormone stimulus;; serine-type endopeptidase inhibitor activity	extracellular region		binding;; enzyme regulator activity	enzyme inhibitor activity;; protein binding	cellular process;; metabolic process;; response to stimulus	biosynthetic process;; cellular metabolic process;; macromolecule metabolic process;; primary metabolic process;; response to chemical stimulus;; response to endogenous stimulus
1230.2147	1169.5646	1136.2792	4293.6797	4113.7206	4409.4028	2.3745585e-06	-1.85801	10.20218	12.06020	1339177	1448724_at	9 59.0 cM	chr9:107203813-107204254	9 F1	chr9:107199019-107204292	9 F1	RSQ	Mm.4592	NM_009895	1	1	12700		  Cish	cytokine inducible SH2-containing protein (Cish), mRNA.		Jak-STAT signaling pathway CLASS Environmental Information Processing; Signal Transduction; Jak-STAT signaling pathway [PATH:mmu04630]	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;; intracellular signaling cascade;; modification-dependent protein catabolic process;; negative regulation of signal transduction;; plasma membrane;; protein binding;; regulation of growth	cell;; cell part	cell part;; membrane	binding	protein binding	biological regulation;; cellular process;; growth;; metabolic process;; negative regulation of biological process;; regulation of biological process	catabolic process;; cell communication;; cellular metabolic process;; macromolecule metabolic process;; negative regulation of biological process;; negative regulation of cellular process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of growth;; regulation of metabolic process;; regulation of molecular function
1240.6519	1217.0150	1208.5964	2674.5881	2442.3125	2562.1903	0.0005490209	-1.06572	10.25504	11.32077	1339195	1448747_at	15	chr15:58012414-58012790	15 D1	chr15:58011633-58046433	15 D1	RSQ	Mm.292042	NM_026346	1	1	67731		  Fbxo32	F-box protein 32 (Fbxo32), mRNA.			modification-dependent protein catabolic process;; nucleus;; protein binding	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding	protein binding	cellular process;; metabolic process	catabolic process;; cellular metabolic process;; macromolecule metabolic process;; primary metabolic process
472.4270	433.4186	474.8078	1003.3441	981.8046	934.7482	7.1381435e-05	-1.08119	8.84492	9.92611	1339494	1449109_at	10 52.0 cM	chr10:94875126-94875560	10 C2	chr10:94874675-94879455	10 C2	RSQ	Mm.474283	NM_007706	3	3	216233		  Socs2	suppressor of cytokine signaling 2 (Socs2), mRNA.		Insulin signaling pathway;; Jak-STAT signaling pathway;; Type II diabetes mellitus CLASS Environmental Information Processing; Signal Transduction; Jak-STAT signaling pathway [PATH:mmu04630] Cellular Processes; Endocrine System; Insulin signaling pathway [PATH:mmu04910] Human Diseases; Metabolic Disorders; Type II diabetes mellitus [PATH:mmu04930]	growth hormone receptor binding;; intracellular signaling cascade;; lactation;; lactation;; mammary gland alveolus development;; mammary gland alveolus development;; modification-dependent protein catabolic process;; negative regulation of JAK-STAT cascade;; negative regulation of multicellular organism growth;; negative regulation of multicellular organism growth;; negative regulation of signal transduction;; positive regulation of neuron differentiation;; regulation of growth;; regulation of multicellular organism growth			binding	protein binding	biological regulation;; cellular process;; developmental process;; growth;; metabolic process;; multicellular organismal process;; negative regulation of biological process;; positive regulation of biological process;; regulation of biological process;; reproduction;; reproductive process	anatomical structure development;; catabolic process;; cell communication;; cellular developmental process;; cellular metabolic process;; macromolecule metabolic process;; multicellular organism growth;; multicellular organism reproduction;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of growth;; negative regulation of multicellular organismal process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of developmental process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process;; regulation of growth;; regulation of multicellular organismal process;; reproductive process;; reproductive process in a multicellular organism
101.0482	111.2058	98.5324	258.5023	239.1447	253.1287	0.00012121675	-1.27366	6.69284	7.96650	1339649	1449297_at	9 1.11 cM	chr9:5372098-5372617	9 A1	chr9:5345475-5373034	9 A1	RSQ	Mm.42163	NM_009808	2	2	12364		  Casp12	caspase 12 (Casp12), mRNA.		Alzheimer's disease;; Amyotrophic lateral sclerosis (ALS);; Apoptosis;; Prion diseases CLASS Cellular Processes; Cell Growth and Death; Apoptosis [PATH:mmu04210] Human Diseases; Neurodegenerative Diseases; Alzheimer's disease [PATH:mmu05010] Human Diseases; Neurodegenerative Diseases; Amyotrophic lateral sclerosis (ALS) [PATH:mmu05014] Human Diseases; Neurodegenerative Diseases; Prion diseases [PATH:mmu05020]	apoptosis;; apoptosis in response to endoplasmic reticulum stress;; cysteine-type endopeptidase activity;; cysteine-type peptidase activity;; endoplasmic reticulum;; endoplasmic reticulum unfolded protein response;; hydrolase activity;; induction of apoptosis;; intracellular;; peptidase activity;; protein binding;; proteolysis;; regulation of apoptosis;; virus-infected cell apoptosis	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; catalytic activity	hydrolase activity;; protein binding	biological regulation;; cellular process;; death;; developmental process;; metabolic process;; positive regulation of biological process;; regulation of biological process;; response to stimulus	catabolic process;; cell communication;; cell death;; cellular response to stimulus;; macromolecule metabolic process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of developmental process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process;; response to biotic stimulus;; response to chemical stimulus;; response to stress
69.0098	69.3379	65.9741	393.3762	400.2617	420.8046	5.1116691e-07	-2.57115	6.08938	8.66052	1348421	1449526_a_at	7	chr7:133911136-133919078	7 F3	chr7:133909927-133919159	7 F3	RSQ	Mm.246881	NM_024228	1	1	68616		  Gdpd3	glycerophosphodiester phosphodiesterase domain containing 3 (Gdpd3), mRNA.			glycerol metabolic process;; glycerophosphodiester phosphodiesterase activity;; hydrolase activity;; integral to membrane;; lipid metabolic process;; membrane;; phosphoric diester hydrolase activity	cell;; cell part	cell part;; membrane;; membrane part	catalytic activity	hydrolase activity	cellular process;; metabolic process	alcohol metabolic process;; cellular metabolic process;; primary metabolic process
108.9853	107.4891	98.8646	311.8064	219.6831	224.5103	0.012297776	-1.24367	6.71447	7.95814	1348434	1449590_a_at	9	chr9:99288490-99290204	9 E3.3	chr9:99285838-99337131	9 E3.3	RSQ	Mm.2045	NM_008624	1	1	17532		  Mras	muscle and microspikes RAS (Mras), mRNA.		MAPK signaling pathway;; Regulation of actin cytoskeleton CLASS Environmental Information Processing; Signal Transduction; MAPK signaling pathway [PATH:mmu04010] Cellular Processes; Cell Motility; Regulation of actin cytoskeleton [PATH:mmu04810] Cellular Processes; Cell Communication; Tight junction [PATH:mmu04530];; Tight junction	GTP binding;; intracellular;; membrane;; nucleotide binding;; plasma membrane;; small GTPase mediated signal transduction	cell;; cell part	cell part;; intracellular;; membrane	binding	nucleotide binding	biological regulation;; cellular process;; regulation of biological process	cell communication;; regulation of biological process;; regulation of cellular process
25.8331	31.5116	31.5116	82.9659	78.6861	72.4687	0.000711184	-1.40167	4.88226	6.28392	1348627	1450259_a_at	11 60.5 cM	chr11:100742343-100745240	11 D	chr11:100720716-100746483	11 D	RSQ	Mm.277403	NM_011488	1	1	20850	RP23-279L23.4	  Stat5a	signal transducer and activator of transcription 5A (Stat5a), mRNA.	EPO Signaling Pathway;; Growth Hormone Signaling Pathway;; IL 2 signaling pathway;; IL 3 signaling pathway;; IL-2 Receptor Beta Chain in T cell Activation;; IL-7 Signal Transduction;; IL22 Soluble Receptor Signaling Pathway;; Inhibition of Cellular Proliferation by Gleevec;; TPO Signaling Pathway	Acute myeloid leukemia CLASS Environmental Information Processing; Signal Transduction; ErbB signaling pathway [PATH:mmu04012] Environmental Information Processing; Signal Transduction; Jak-STAT signaling pathway [PATH:mmu04630] Human Diseases; Cancers; Pathways in cancer [PATH:mmu05200] Human Diseases; Cancers; Acute myeloid leukemia [PATH:mmu05221] Hu;; Chronic myeloid leukemia;; ErbB signaling pathway;; Jak-STAT signaling pathway;; Pathways in cancer	calcium ion binding;; cytokine-mediated signaling pathway;; cytoplasm;; development of secondary female sexual characteristics;; development of secondary male sexual characteristics;; development of secondary male sexual characteristics;; DNA binding;; epithelial cell differentiation involved in prostate gland development;; female pregnancy;; JAK-STAT cascade;; lactation;; lipid storage;; luteinization;; mammary gland development;; natural killer cell differentiation;; negative regulation of apoptosis;; negative regulation of erythrocyte differentiation;; negative regulation of mast cell apoptosis;; nucleus;; peptidyl-tyrosine phosphorylation;; Peyer's patch development;; positive regulation of activated T cell proliferation;; positive regulation of activated T cell proliferation;; positive regulation of B cell differentiation;; positive regulation of cell proliferation;; positive regulation of cell proliferation;; positive regulation of gamma-delta T cell differentiation;; positive regulation of inflammatory response;; positive regulation of interleukin-2 biosynthetic process;; positive regulation of lymphocyte differentiation;; positive regulation of mast cell differentiation;; positive regulation of mast cell proliferation;; positive regulation of mitotic cell cycle;; positive regulation of multicellular organism growth;; positive regulation of natural killer cell differentiation;; positive regulation of natural killer cell mediated cytotoxicity;; positive regulation of survival gene product expression;; positive regulation of transcription from RNA polymerase II promoter;; positive regulation of transcription from RNA polymerase II promoter;; prostate gland epithelium morphogenesis;; protein binding;; regulation of cell adhesion;; regulation of epithelial cell differentiation;; regulation of steroid metabolic process;; regulation of transcription from RNA polymerase II promoter;; regulation of transcription, DNA-dependent;; response to peptide hormone stimulus;; signal transducer activity;; signal transduction;; T cell differentiation in the thymus;; T cell homeostasis;; transcription;; transcription factor activity	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; molecular transducer activity;; transcription regulator activity	ion binding;; nucleic acid binding;; protein binding;; signal transducer activity;; transcription factor activity	biological adhesion;; biological regulation;; cell killing;; cellular process;; death;; developmental process;; growth;; immune system process;; localization;; metabolic process;; multi-organism process;; multicellular organismal process;; negative regulation of biological process;; positive regulation of biological process;; regulation of biological process;; reproduction;; reproductive process;; response to stimulus;; rhythmic process	anatomical structure development;; anatomical structure morphogenesis;; biosynthetic process;; cell activation;; cell adhesion;; cell communication;; cell cycle;; cell death;; cell proliferation;; cellular developmental process;; cellular metabolic process;; cytokine production;; female pregnancy;; immune effector process;; immune response;; immune system development;; leukocyte activation;; leukocyte homeostasis;; leukocyte mediated cytotoxicity;; macromolecule localization;; macromolecule metabolic process;; multicellular organism growth;; multicellular organism reproduction;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of developmental process;; nitrogen compound metabolic process;; ovulation cycle;; ovulation cycle process;; positive regulation of biological process;; positive regulation of cell killing;; positive regulation of cellular process;; positive regulation of developmental process;; positive regulation of growth;; positive regulation of immune system process;; positive regulation of metabolic process;; positive regulation of multicellular organismal process;; positive regulation of response to stimulus;; primary metabolic process;; regulation of biological process;; regulation of biological quality;; regulation of cell killing;; regulation of cellular process;; regulation of developmental process;; regulation of growth;; regulation of homeostatic process;; regulation of immune system process;; regulation of metabolic process;; regulation of multicellular organismal process;; regulation of response to stimulus;; reproductive developmental process;; reproductive process;; reproductive process in a multicellular organism;; response to chemical stimulus;; response to endogenous stimulus;; response to external stimulus;; response to stress
119.8420	114.0869	131.5029	478.6041	582.4354	535.5104	6.0248296e-05	-2.12516	6.92598	9.05114	1340562	1450606_at	11	chr11:98248718-98249320	11 D	chr11:98247945-98249411	11 D	RSQ	Mm.57030	NM_008890	1	1	18948	RP23-355L10.6	  Pnmt	phenylethanolamine-N-methyltransferase (Pnmt), mRNA.		Metabolic pathways CLASS Metabolism; Amino Acid Metabolism; Tyrosine metabolism [PATH:mmu00350];; Tyrosine metabolism	catecholamine biosynthetic process;; methyltransferase activity;; phenylethanolamine N-methyltransferase activity;; transferase activity			catalytic activity	transferase activity	cellular process;; metabolic process	alcohol metabolic process;; biosynthetic process;; cellular metabolic process;; nitrogen compound metabolic process;; primary metabolic process
351.4852	390.0426	342.2789	1629.9509	1790.5964	1860.1253	9.287748e-06	-2.28473	8.49461	10.77934	1341364	1451715_at	2 91.0 cM	chr2:160191130-160191719	2 H2	chr2:160189412-160192801	2 H2	RSQ	Mm.330745	NM_010658	1	1	16658	RP23-333A18.1	  Mafb	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) (Mafb), mRNA.			brain segmentation;; DNA binding;; inner ear morphogenesis;; nucleus;; positive regulation of transcription from RNA polymerase II promoter;; protein binding;; regulation of transcription from RNA polymerase II promoter;; regulation of transcription, DNA-dependent;; respiratory gaseous exchange;; rhombomere 5 development;; rhombomere 6 development;; segment specification;; sequence-specific DNA binding;; transcription;; transcription factor activity;; transcription factor complex	cell;; cell part;; macromolecular complex;; membrane-enclosed lumen;; organelle;; organelle part	cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane-bounded organelle;; organelle lumen;; organelle part;; protein complex	binding;; transcription regulator activity	nucleic acid binding;; protein binding;; transcription factor activity	biological regulation;; cellular process;; developmental process;; metabolic process;; multicellular organismal process;; positive regulation of biological process;; regulation of biological process	anatomical structure development;; anatomical structure morphogenesis;; biosynthetic process;; cellular metabolic process;; embryonic development;; macromolecule metabolic process;; multicellular organismal development;; nitrogen compound metabolic process;; pattern specification process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of metabolic process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of metabolic process;; respiratory gaseous exchange
715.7394	690.2579	665.3594	2766.2138	2808.5714	2755.7235	8.6868417e-05	-2.00842	9.43076	11.43918	1341365	1451716_at	2 H2|2 91.0 cM	chr2:160189869-160190403	2 H2			UG5	Mm.330745				16658	RP23-333A18.1	  Mafb	V-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) (Mafb), mRNA			brain segmentation;; DNA binding;; inner ear morphogenesis;; nucleus;; positive regulation of transcription from RNA polymerase II promoter;; protein binding;; regulation of transcription from RNA polymerase II promoter;; regulation of transcription, DNA-dependent;; respiratory gaseous exchange;; rhombomere 5 development;; rhombomere 6 development;; segment specification;; sequence-specific DNA binding;; transcription;; transcription factor activity;; transcription factor complex	cell;; cell part;; macromolecular complex;; membrane-enclosed lumen;; organelle;; organelle part	cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane-bounded organelle;; organelle lumen;; organelle part;; protein complex	binding;; transcription regulator activity	nucleic acid binding;; protein binding;; transcription factor activity	biological regulation;; cellular process;; developmental process;; metabolic process;; multicellular organismal process;; positive regulation of biological process;; regulation of biological process	anatomical structure development;; anatomical structure morphogenesis;; biosynthetic process;; cellular metabolic process;; embryonic development;; macromolecule metabolic process;; multicellular organismal development;; nitrogen compound metabolic process;; pattern specification process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of metabolic process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of metabolic process;; respiratory gaseous exchange
112.4378	108.5944	108.2185	197.3820	258.9297	255.3610	0.011894786	-1.10136	6.77786	7.87922	1341465	1451883_at	3 A2|3	chr3:19586092-19586509	3 A2			UGA	Mm.450006				620316		  BC002189	CDNA sequence BC002189, mRNA (cDNA clone MGC:7386 IMAGE:3487872)									
429.9117	430.9946	451.3442	967.9575	883.5241	909.2381	9.6843356e-05	-1.07231	8.77250	9.84481	1341716	1452257_at	16	chr16:31457009-31457556	16 B2	chr16:31422382-31458987	16 B2	RSQ	Mm.293470	NM_175177	2	1	71911		  Bdh1	3-hydroxybutyrate dehydrogenase, type 1 (Bdh1), nuclear gene encoding mitochondrial protein, transcript variant 1, mRNA.		Butanoate metabolism;; Metabolic pathways CLASS Metabolism; Carbohydrate Metabolism; Butanoate metabolism [PATH:mmu00650] Metabolism; Lipid Metabolism; Synthesis and degradation of ketone bodies [PATH:mmu00072];; Synthesis and degradation of ketone bodies	3-hydroxybutyrate dehydrogenase activity;; binding;; catalytic activity;; metabolic process;; mitochondrial inner membrane;; mitochondrion;; oxidation reduction;; oxidoreductase activity	cell;; cell part;; envelope;; organelle;; organelle part	cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane;; membrane-bounded organelle;; organelle envelope;; organelle membrane;; organelle part	binding;; catalytic activity	oxidoreductase activity	metabolic process	oxidation reduction
22.9533	20.3788	18.4784	57.4732	44.0718	41.3349	0.004162931	-1.19950	4.35913	5.55863	1349572	1454608_x_at	18 7.0 cM	chr18:20832268-20832377	18 A2	chr18:20823913-20832820	18 A2	RSQ	Mm.2108	NM_013697	1	1	22139		  Ttr	transthyretin (Ttr), mRNA.			extracellular region;; hormone activity;; thyroid hormone generation;; transport	extracellular region		binding	protein binding	biological regulation;; cellular process;; establishment of localization;; localization;; metabolic process	cellular metabolic process;; establishment of localization;; hormone metabolic process;; nitrogen compound metabolic process;; primary metabolic process;; regulation of biological quality;; transport
432.4445	449.9297	427.3303	901.7931	860.0940	908.3186	7.1981979e-06	-1.02764	8.76971	9.79735	1342410	1455220_at	19 37.6 cM	chr19:41920549-41921065	19 C3	chr19:41920467-41922622	19 C3	RSQ	Mm.222723	NM_177603	1	1	212398		  Frat2	frequently rearranged in advanced T-cell lymphomas 2 (Frat2), mRNA.		Wnt signaling pathway CLASS Environmental Information Processing; Signal Transduction; Wnt signaling pathway [PATH:mmu04310]	Wnt receptor signaling pathway;; Wnt receptor signaling pathway					biological regulation;; cellular process;; regulation of biological process	cell communication;; regulation of biological process;; regulation of cellular process
323.9602	308.2770	321.4307	1664.2896	1416.2154	1466.3313	0.00037745141	-2.25013	8.31204	10.56217	1342536	1455869_at	11	chr11:5908951-5909394	11 A1			UGA	Mm.458283						  	Transcribed locus, moderately similar to XP_001477892.1 PREDICTED: hypothetical protein [Mus musculus]									
10.0928	8.9278	11.9452	24.0086	26.5427	20.2236	0.0020615281	-1.19392	3.35731	4.55123	1349780	1455913_x_at	18 7.0 cM	chr18:20832283-20832379	18 A2	chr18:20823913-20832820	18 A2	RSQ	Mm.2108	NM_013697	1	1	22139		  Ttr	transthyretin (Ttr), mRNA.			extracellular region;; hormone activity;; thyroid hormone generation;; transport	extracellular region		binding	protein binding	biological regulation;; cellular process;; establishment of localization;; localization;; metabolic process	cellular metabolic process;; establishment of localization;; hormone metabolic process;; nitrogen compound metabolic process;; primary metabolic process;; regulation of biological quality;; transport
135.3742	125.2048	112.1038	269.4157	288.4518	260.9304	0.00093133607	-1.13858	6.95255	8.09113	1342923	1460336_at	5	chr5:51849303-51854566	5 C1	chr5:51845487-51945160	5 C1	RSQ	Mm.259072	NM_008904	2	1	19017		  Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha (Ppargc1a), transcript variant 1, mRNA.	Regulation of PGC-1a;; Role of PPAR-gamma Coactivators in Obesity and Thermogenesis	Adipocytokine signaling pathway;; Huntington's disease CLASS Cellular Processes; Endocrine System; Insulin signaling pathway [PATH:mmu04910] Cellular Processes; Endocrine System; Adipocytokine signaling pathway [PATH:mmu04920] Human Diseases; Neurodegenerative Diseases; Huntington's disease [PATH:mmu05016];; Insulin signaling pathway	DNA binding;; nucleic acid binding;; nucleotide binding;; nucleus;; positive regulation of transcription;; positive regulation of transcription from RNA polymerase II promoter;; protein binding;; receptor activity;; regulation of transcription, DNA-dependent;; respiratory electron transport chain;; RNA binding;; transcription;; transcription activator activity;; transcription coactivator activity	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; molecular transducer activity;; transcription regulator activity	nucleic acid binding;; nucleotide binding;; protein binding;; signal transducer activity;; transcription activator activity;; transcription cofactor activity	biological regulation;; cellular process;; metabolic process;; positive regulation of biological process;; regulation of biological process	biosynthetic process;; cellular metabolic process;; macromolecule metabolic process;; nitrogen compound metabolic process;; oxidation reduction;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of metabolic process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of metabolic process
721.2315	703.3000	714.5902	1895.7038	1694.9889	1660.2075	0.0016019058	-1.29315	9.47776	10.77091	1350443	1428352_at	8	chr8:73359362-73359595	8 B3.3	chr8:73359036-73363619	8 B3.3	RSQ	Mm.24215	NM_027560	1	1	70807		  Arrdc2	arrestin domain containing 2 (Arrdc2), mRNA.									
163.3294	172.5743	179.3186	314.2027	376.0961	358.6830	0.0014195701	-1.02266	7.42303	8.44569	1351838	1430352_at	6 D1	chr6:92795416-92795850	6 D1			UGA	Mm.257557				101401	mCG_142056	  Adamts9	MKIAA1312 protein			endopeptidase activity;; extracellular space;; metallopeptidase activity;; positive regulation of melanocyte differentiation;; proteinaceous extracellular matrix;; proteolysis;; proteolysis;; regulation of pigmentation during development	extracellular region;; extracellular region part	extracellular matrix;; extracellular region part;; extracellular space	catalytic activity	hydrolase activity	biological regulation;; cellular process;; developmental process;; metabolic process;; pigmentation;; positive regulation of biological process;; regulation of biological process	catabolic process;; cellular developmental process;; macromolecule metabolic process;; pigmentation during development;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of developmental process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of developmental process
24.0320	31.9706	25.7320	74.0188	64.2147	46.0115	0.013258111	-1.15584	4.75702	5.91286	1352872	1431869_at	1	chr1:78591732-78592181	1 C4			UGA	Mm.462998						  	Transcribed locus									
31.3186	35.9796	39.9359	84.3463	74.2800	84.2294	0.0014605726	-1.18391	5.15256	6.33647	1353251	1432461_at	10	chr10:22889870-22905127	10 A3			UGA	Mm.444786						  	Transcribed locus									
157.8126	162.8186	169.7019	380.3680	360.8920	324.3706	0.00095723691	-1.11738	7.35202	8.46939	1355034	1435188_at	3	chr3:95682590-95683010	3 F2.1	chr3:95682427-95686151	3 F2.1	RSQ	Mm.331218	NM_001033302	1	1	229599		  Gm129	predicted gene 129 (Gm129), mRNA.									
30.9623	42.6913	44.5354	94.6231	83.2493	78.6205	0.0097901312	-1.13171	5.28173	6.41344	1355746	1436309_at	8	chr8:88161038-88161540	8 C3	chr8:88160486-88214908	8 C3	RSQ	Mm.126079	NM_001081324	1	1	74513		  Neto2	neuropilin (NRP) and tolloid (TLL)-like 2 (Neto2), mRNA.			integral to membrane;; membrane;; plasma membrane;; receptor activity	cell;; cell part	cell part;; membrane;; membrane part	molecular transducer activity	signal transducer activity		
29.1586	28.9029	28.0957	63.2457	54.4033	63.3116	0.0032645792	-1.06722	4.84376	5.91097	1357927	1440016_at		chr3:116216915-116217450	3 G1			IPA							  	ESTs									
686.9248	736.2371	726.0295	1542.6583	1455.2829	1414.9135	3.4408054e-05	-1.03762	9.48397	10.52159	1358662	1440844_at	11	chr11:94072819-94072951	11 D	chr11:94072767-94076809	11 D	RSQ	Mm.259673	NM_009427	1	1	22057	RP23-244C22.1	  Tob1	transducer of ErbB-2.1 (Tob1), mRNA.	Role of Tob in T-cell activation		cytoplasm;; negative regulation of BMP signaling pathway;; negative regulation of osteoblast differentiation;; protein binding;; SMAD binding;; SMAD protein nuclear translocation;; transcription corepressor activity	cell;; cell part	cell part;; intracellular;; intracellular part	binding;; transcription regulator activity	protein binding;; transcription cofactor activity;; transcription repressor activity	biological regulation;; cellular process;; developmental process;; establishment of localization;; localization;; multicellular organismal process;; negative regulation of biological process;; regulation of biological process	anatomical structure development;; cell communication;; cellular developmental process;; cellular localization;; establishment of localization;; establishment of localization in cell;; establishment of protein localization;; macromolecule localization;; multicellular organismal development;; negative regulation of biological process;; negative regulation of cellular process;; negative regulation of developmental process;; ossification;; regulation of biological process;; regulation of cellular process;; regulation of developmental process;; regulation of multicellular organismal process;; tissue remodeling;; transport
166.6573	176.0408	162.3692	396.8003	359.5980	355.7399	0.00011455178	-1.13785	7.39455	8.53240	1359017	1441228_at	6 G1	chr6:134936253-134936706	6 G1			UG5	Mm.296104				381823		  Apold1	Apolipoprotein L domain containing 1 (Apold1), mRNA									
107.1100	91.2041	100.0896	248.2030	229.3167	268.3572	0.00014807324	-1.32182	6.63304	7.95486	1359079	1441300_at	12 A1.1	chr12:17181256-17181600	12 A1.1			UGA	Mm.40173				382571		  Kcnf1	Potassium voltage-gated channel, subfamily F, member 1 (Kcnf1), mRNA			integral to membrane;; ion channel activity;; ion transport;; membrane;; potassium channel activity;; potassium ion binding;; potassium ion transport;; protein binding;; transport;; voltage-gated ion channel activity;; voltage-gated potassium channel activity;; voltage-gated potassium channel complex	cell;; cell part;; macromolecular complex	cell part;; membrane;; membrane part;; protein complex	binding;; transporter activity	ion binding;; protein binding;; substrate-specific transporter activity;; transmembrane transporter activity	establishment of localization;; localization	establishment of localization;; transport
114.4313	113.9699	113.0672	304.5925	328.7047	401.3536	0.0054594723	-1.58941	6.83063	8.42004	1359154	1441384_at	9 F3	chr9:115984734-115985251	9 F3			UG5	Mm.29221				73748		  Gadl1	Glutamate decarboxylase-like 1 (Gadl1), mRNA			carboxy-lyase activity;; carboxylic acid metabolic process;; catalytic activity;; lyase activity;; pyridoxal phosphate binding			binding;; catalytic activity	cofactor binding;; lipid binding;; lyase activity;; vitamin binding	cellular process;; metabolic process	cellular metabolic process
140.4297	146.9383	125.8017	364.9948	405.3497	366.8801	0.000107031	-1.46205	7.10259	8.56464	1360668	1443100_at	14	chr14:18661754-18662090	14 A2			UGA	Mm.406687						  	Transcribed locus									
248.1519	219.4084	234.4187	542.2619	507.4418	462.3202	0.00028336503	-1.10573	7.86850	8.97423	1362558	1445148_at		chr1:55487728-55488266	1 C1.2			IPA							  	Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230091K16 product:unknown EST, full insert sequence.									
47.8348	51.0117	53.2824	101.1707	101.9682	106.6829	0.00025077457	-1.02716	5.66278	6.68994	1363186	1445809_at	10	chr10:23067802-23068323	10 A3			UGA	Mm.444891						  	Transcribed locus									
22.3955	23.8650	20.6031	48.0810	41.6238	44.5490	0.00030523845	-1.00577	4.47558	5.48135	1363507	1446134_at		chr15:66989390-66989885	15 D2			IPA							  	ESTs									
71.0820	80.9267	72.7367	173.5964	195.1596	164.1151	0.00025802251	-1.24403	6.22486	7.46889	1364374	1447023_at		chr14:18606024-18606518	14 A2			IPA							  	ESTs									
13.8693	22.9534	14.2759	28.9957	55.7832	35.3177	0.030392382	-1.21729	4.04999	5.26728	1364676	1447360_at	14 D3|14 42.0 cM	chr14:76821285-76821639	14 D3			UGA	Mm.153272				21807		  Tsc22d1	TSC22-related inducible leucine zipper 1b (Tilz1b)			cytoplasm;; nucleus;; regulation of transcription, DNA-dependent;; transcription;; transcription factor activity	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding;; transcription regulator activity	nucleic acid binding;; transcription factor activity	biological regulation;; cellular process;; metabolic process;; regulation of biological process	biosynthetic process;; cellular metabolic process;; macromolecule metabolic process;; nitrogen compound metabolic process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of metabolic process
195.1244	198.8168	192.7568	462.8211	440.0609	415.9858	0.00066732964	-1.16736	7.61139	8.77875	1372117	1447830_s_at	1 78.0 cM	chr1:145847885-145847980	1 F	chr1:145846467-145851279	1 F	RSQ	Mm.28262	NM_009061	1	1	19735	AL592303.1	  Rgs2	regulator of G-protein signaling 2 (Rgs2), mRNA.			brown fat cell differentiation;; cell cycle;; G-protein coupled receptor protein signaling pathway;; GTPase activator activity;; negative regulation of signal transduction;; nucleus;; signal transducer activity;; spermatogenesis	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	enzyme regulator activity;; molecular transducer activity	enzyme activator activity;; nucleoside-triphosphatase regulator activity;; signal transducer activity	biological regulation;; cellular process;; developmental process;; negative regulation of biological process;; regulation of biological process;; reproduction;; reproductive process	cell communication;; cell cycle;; cellular developmental process;; gamete generation;; negative regulation of biological process;; negative regulation of cellular process;; regulation of biological process;; regulation of cellular process;; reproductive process;; sexual reproduction
163.2630	149.6342	160.3225	431.9551	370.4974	367.5856	0.00064747098	-1.30294	7.30039	8.60333	1372229	1452771_s_at	1 24.1 cM	chr1:78703065-78703322	1 C4	chr1:78654399-78704318	1 C4	RSQ	Mm.276016	NM_001136222	3	1	74205		  Acsl3	acyl-CoA synthetase long-chain family member 3 (Acsl3), transcript variant 3, mRNA.		Adipocytokine signaling pathway CLASS Metabolism; Lipid Metabolism; Fatty acid metabolism [PATH:mmu00071] Environmental Information Processing; Membrane Transport; Other transporters Cellular Processes; Endocrine System; Adipocytokine signaling pathway [PATH:mmu04920] Cellular Processes; Endocrine System; PPAR signaling pathway [PATH:mmu03320];; Fatty acid metabolism;; Metabolic pathways;; PPAR signaling pathway	ATP binding;; catalytic activity;; endoplasmic reticulum;; fatty acid metabolic process;; integral to membrane;; ligase activity;; lipid metabolic process;; long-chain-fatty-acid-CoA ligase activity;; magnesium ion binding;; membrane;; metabolic process;; microsome;; mitochondrial outer membrane;; mitochondrion;; nucleotide binding;; peroxisome	cell;; cell part;; envelope;; organelle;; organelle part	cell fraction;; cell part;; intracellular;; intracellular organelle;; intracellular organelle part;; intracellular part;; membrane;; membrane part;; membrane-bounded organelle;; organelle envelope;; organelle membrane;; organelle part	binding;; catalytic activity	ion binding;; ligase activity;; nucleoside binding;; nucleotide binding	cellular process;; metabolic process	cellular metabolic process;; primary metabolic process
134.4837	144.7839	157.2401	360.5110	306.5686	345.4387	0.00022867201	-1.21346	7.18196	8.39542	1365491	1453368_at	11 E2	chr11:120237523-120238045	11 E2			UGA	Mm.476851				71885	RP23-82I5.4	  2310003H01Rik	RIKEN cDNA 2310003H01 gene, mRNA (cDNA clone MGC:37540 IMAGE:4986832)			DNA binding;; DNA repair;; nucleus;; response to DNA damage stimulus	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle	binding	nucleic acid binding	cellular process;; metabolic process;; response to stimulus	cellular metabolic process;; cellular response to stimulus;; macromolecule metabolic process;; nitrogen compound metabolic process;; primary metabolic process;; response to stress
56.6816	47.6452	57.2635	379.9297	338.0776	368.4297	6.0764879e-05	-2.75248	5.74620	8.49868	1366492	1454768_at	12	chr12:17179290-17179470	12 A1.1	chr12:17178905-17183694	12 A1.1	RSQ	Mm.40173	NM_201531	1	1	382571		  Kcnf1	potassium voltage-gated channel, subfamily F, member 1 (Kcnf1), mRNA.			integral to membrane;; ion channel activity;; ion transport;; membrane;; potassium channel activity;; potassium ion binding;; potassium ion transport;; protein binding;; transport;; voltage-gated ion channel activity;; voltage-gated potassium channel activity;; voltage-gated potassium channel complex	cell;; cell part;; macromolecular complex	cell part;; membrane;; membrane part;; protein complex	binding;; transporter activity	ion binding;; protein binding;; substrate-specific transporter activity;; transmembrane transporter activity	establishment of localization;; localization	establishment of localization;; transport
72.7277	79.6896	84.3333	165.3645	186.3418	180.2684	0.00016520924	-1.16884	6.29959	7.46844	1367622	1456789_at	4	chr4:55095838-55096382	4 B3	chr4:54960816-55096435	4 B3	RSQ	Mm.102904	NM_172867	1	1	242466	RP23-281K3.2	  Zfp462	zinc finger protein 462 (Zfp462), mRNA.			negative regulation of DNA binding;; nucleus;; positive regulation of transcription from RNA polymerase II promoter	cell;; cell part;; organelle	cell part;; intracellular;; intracellular organelle;; intracellular part;; membrane-bounded organelle			biological regulation;; cellular process;; metabolic process;; positive regulation of biological process;; regulation of biological process	biosynthetic process;; cellular metabolic process;; macromolecule metabolic process;; nitrogen compound metabolic process;; positive regulation of biological process;; positive regulation of cellular process;; positive regulation of metabolic process;; primary metabolic process;; regulation of biological process;; regulation of cellular process;; regulation of metabolic process;; regulation of molecular function
42.0233	40.3867	38.2933	118.1431	94.5930	80.9575	0.011571678	-1.26640	5.32932	6.59572	1368912	1458210_at	17 E1.1	chr17:66904670-66905148	17 E1.1			UG5	Mm.218634				74556		  9130404H23Rik	PREDICTED: Mus musculus RIKEN cDNA 9130404H23 gene (9130404H23Rik), mRNA									
255.0898	229.1534	238.5366	647.8549	746.7632	809.0697	0.00074085621	-1.60369	7.91103	9.51472	1369075	1458409_at		chr14:55370840-55371308	14 C3			IPA							  	ESTs									
58.4382	71.7892	63.2632	322.4894	345.6549	374.7537	4.5809926e-05	-2.43276	6.00594	8.43870	1369924	1459289_at		chr13:110341530-110342088	13 D2.1			IPA							  	Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630027C04 product:unknown EST, full insert sequence.