Trans-NIH Jak-Stat Initiative

Data file: EGALLDataSet

Generated Excel file: data.search/EGALLDataSet-search.txt

Reporting fold-change for the Search Results in the lower part of table with 55 genes/probes.
Note the fold-change values are in the bottom part of the table.

Summary of threshold filtered fold-changes of Search Results Table for (fold-changes >= 1.6) and for (1.0/fold-changes >= 1.6):

Kept 10 genes/probes: [Stat3 1459961_a_at] [Socs2 1438470_at] [Socs3 1456212_x_at] [Socs3 1455899_x_at] [Stat5a 1450259_a_at] [Socs2 1449109_at] [Stat3 1426587_a_at] [Stat5a 1421469_a_at] [Socs2 1418507_s_at] [Socs3 1416576_at]
Removed 45 genes/probes: [Socs2 1446085_at] [Socs2 1442586_at] [Socs2 1441476_at] [Socs1 1440047_at] [Prlr 1437397_at] [Igf1 1434413_at] [Stat3 1460700_at] [Igf1 1452014_a_at] [Ghr 1451871_a_at] [Prlr 1451850_at] [Prlr 1451844_at] [Ghr 1451501_a_at] [Socs1 1450446_a_at] [Stat2 1450403_at] [Il6 1450297_at] [Prlr 1450226_at] [Stat1 1450034_at] [Stat1 1450033_a_at] [Il2 1449990_at] [Thpo 1449569_at] [Stat4 1448713_at] [Prlr 1448556_at] [Igf1 1437401_at] [Jak1 1433805_at] [Jak1 1433804_at] [Jak1 1433803_at] [Prl 1429287_a_at] [Jak3 1427092_at] [Prlr 1425853_s_at] [Jak3 1425750_a_at] [Erbb2 1424919_at] [Stat3 1424272_at] [Stat5b 1422103_a_at] [Stat5b 1422102_a_at] [Stat2 1421911_at] [Prlr 1421382_at] [Jak2 1421066_at] [Jak2 1421065_at] [Stat1 1420915_at] [Foxp3 1420765_a_at] [Elf5 1419556_at] [Elf5 1419555_at] [Igf1 1419519_at] [Il15 1418219_at] [Ghr 1417962_s_at]

Scale of intensity data quantile values and corresponding background color
The intensity data range [153.89 : 631.69] is for the entire database 'EGALLDataSet.txt' file.
Data value 153.89 222.15 290.4 358.66 426.92 495.18 563.44
Quantile 1 2 3 4 5 6 7
Color              

Search database filtered by Gene and/or Probe IDs and Experiment Groups

Row Gene Socs3 Socs2 Stat5a Stat3 Socs2 Stat5a Socs3 Socs3 Socs2 Stat3
Row Well ID 1328194 1343687 1344357 1345881 1339494 1348627 1349775 1349871 1356918 1372677
Row Samples | Feature ID 1416576_at 1418507_s_at 1421469_a_at 1426587_a_at 1449109_at 1450259_a_at 1455899_x_at 1456212_x_at 1438470_at 1459961_a_at
1 class A: EG003.1-01.Muscle.Stat5MKO.42.GH 2725.9996 248.9299 100.6414 2577.5003 472.4270 25.8331 3532.9631 2547.2819 88.5275 224.7226
2 class A: EG003.1-02.Muscle.Stat5MKO.43.GH 2806.0964 268.4852 113.8983 2553.8797 433.4186 31.5116 3291.2873 2516.3176 76.0028 188.5562
3 class A: EG003.1-05.Muscle.Stat5MKO.48.GH 2673.9977 246.2027 109.6908 2623.4948 474.8078 31.5116 3378.5646 2565.6128 82.3322 214.4746
4 class B: EG003.2-04.Muscle.Stat5MKO.4035KO.noStim 416.5916 134.6512 198.4358 1022.4180 231.8657 74.5429 380.5947 288.0805 36.9443 112.2798
5 class B: EG003.2-05.Muscle.Stat5MKO.4036KO.noStim 379.8765 73.0052 176.5359 1636.5256 185.9429 65.4503 288.2147 200.8621 33.9261 103.0533
6 class B: EG003.2-06.Muscle.Stat5MKO.4042KO.noStim 532.6616 94.5830 152.8741 1354.3111 203.6540 55.7989 403.0422 249.8199 46.2234 100.7714
7 FOLD-CHANGE STATISTICS
8 Fold-Change fc=(Mean A/Mean B) 6.174 2.5265 0.6143 1.9323 2.2216 0.4538 9.5189 10.327 2.1082 1.9859
9 p-Value 0.000001 0.000627 0.003751 0.001027 0.000082 0.001597 0.000001 0 0.000513 0.000357
10 Nbr A samples 3 3 3 3 3 3 3 3 3 3
11 Nbr B samples 3 3 3 3 3 3 3 3 3 3
12 Mean A 2735.365 254.539 108.077 2584.958 460.218 29.619 3400.938 2543.071 82.287 209.251
13 Mean B 443.043 100.746 175.949 1337.752 207.154 65.264 357.284 246.254 39.031 105.368
14 StdDev A 54.334 9.924 5.531 28.905 18.975 2.677 99.924 20.344 5.113 15.22
15 StdDev B 65.118 25.541 18.605 250.982 18.911 7.653 49.692 35.696 5.233 4.975


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Revised: Sun Dec 13 13:23:07 EST 2009